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Original Article|Articles in Press

Mutational Landscape of Normal Human Skin: Clues to Understanding Early-Stage Carcinogenesis in Keratinocyte Neoplasia

  • Yoon-Seob Kim
    Affiliations
    Precision Medicine Research Center, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea

    Integrated Research Center for Genome Polymorphism, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea

    Department of Microbiology, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
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  • Author Footnotes
    5 These authors contributed equally to this work.
    Chul Hwan Bang
    Footnotes
    5 These authors contributed equally to this work.
    Affiliations
    Department of Dermatology, Seoul St. Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
    Search for articles by this author
  • Author Footnotes
    5 These authors contributed equally to this work.
    Yeun-Jun Chung
    Correspondence
    Correspondence: Yeun-Jun Chung, Precision Medicine Research Center, College of Medicine, The Catholic University of Korea, 222 Banpo-daero, Seocho-gu, Seoul 06591, Republic of Korea.
    Footnotes
    5 These authors contributed equally to this work.
    Affiliations
    Precision Medicine Research Center, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea

    Integrated Research Center for Genome Polymorphism, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea

    Department of Microbiology, College of Medicine, The Catholic University of Korea, Seoul, Republic of Korea
    Search for articles by this author
  • Author Footnotes
    5 These authors contributed equally to this work.
Published:January 27, 2023DOI:https://doi.org/10.1016/j.jid.2023.01.006
      Normal skin contains numerous clones carrying cancer driver mutations. However, the mutational landscape of normal skin and its clonal relationship with skin cancer requires further elucidation. The aim of our study was to investigate the mutational landscape of normal human skin. We performed whole-exome sequencing using physiologically normal skin tissues and the matched peripheral blood (n = 39) and adjacent-matched skin cancers from a subset of patients (n = 10). Exposed skin harbored a median of 530 mutations (10.4/mb, range = 51–2,947), whereas nonexposed skin majorly exhibited significantly fewer mutations (median = 13, 0.25/mb, range = 1–166). Patient age was significantly correlated with the mutational burden. Mutations in six driver genes (NOTCH1, FAT1, TP53, PPM1D, KMT2D, and ASXL1) were identified. De novo mutational signature analysis identified a single signature with components of UV- and aging-related signatures. Normal skin harbored only three instances of copy-neutral loss of heterozygosity in 9q (n = 2) and 6q (n = 1). The mutational burden of normal skin was not correlated with that of matched skin cancers, and no protein-coding mutations were shared. In conclusion, we revealed the mutational landscape of normal skin, highlighting the role of driver genes in the malignant progression of normal skin.

      Abbreviations:

      BCC (basal cell carcinoma), CNA (copy number alteration), CN-LOH (copy-neutral loss of heterozygosity), cSCC (cutaneous squamous cell carcinoma), KC (keratinocyte), WES (whole-exome sequencing)
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